Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs6106201 chr20:2067272 C/T 2.54E-5 485 28.87 35.13 29.68 KM Plot
PRAD rs6106206 chr20:2070470 A/G 3.78E-7 487 28.78 33.6 29.55 KM Plot
PRAD rs6106265 chr20:2108880 A/T 2.94E-11 494 22.27 35.13 28.72 KM Plot
PRAD rs61065803 chr17:79638049 A/C 6.0E-5 490 30.77 31.37 25.17 KM Plot
PRAD rs6112735 chr20:2057531 A/G 3.87E-7 490 28.78 33.53 29.55 KM Plot
PRAD rs6112740 chr20:2058945 T/C 3.6E-7 490 28.8 33.6 29.55 KM Plot
PRAD rs6112743 chr20:2059346 A/G 3.6E-7 490 28.8 33.6 29.55 KM Plot
PRAD rs6112744 chr20:2059473 T/C 3.6E-7 490 28.8 33.6 29.55 KM Plot
PRAD rs6112746 chr20:2059676 A/G 3.6E-7 490 28.8 33.6 29.55 KM Plot
PRAD rs6112747 chr20:2059834 C/T 3.07E-7 494 28.78 33.95 29.55 KM Plot
PRAD rs6112748 chr20:2060258 G/A 3.36E-7 492 28.8 33.47 29.55 KM Plot
PRAD rs6112749 chr20:2060300 C/T 3.36E-7 492 28.8 33.47 29.55 KM Plot
PRAD rs6112753 chr20:2060813 C/T 3.36E-7 492 28.8 33.47 29.55 KM Plot
PRAD rs6112755 chr20:2061248 G/A 3.58E-7 491 28.93 33.18 29.55 KM Plot
PRAD rs6112779 chr20:2065487 C/T 3.81E-7 488 28.87 33.53 29.55 KM Plot